Publications

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2015
Gerasch A, Küntzer J, Niermann P, Stöckel D, Kaufmann M, Kohlbacher O, Lenhof H-P.  2015.  Network-based interactive navigation and analysis of large biological datasets. it - Information Technology. 57(1):37-48.
2014
Gerasch A, Faber D, Küntzer J, Niermann P, Kohlbacher O, Lenhof H-P, Kaufmann M.  2014.  BiNA: a visual analytics tool for biological network data.
Bekos MA, Kaufmann M, Kobourov S, Veeramoni S.  2014.  A note on maximum differential coloring of planar graphs. Journal of Discrete Algorithms. 29:1-7.
2013
Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof H-P.  2013.  NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics (Oxford, England). 29(13):1702-3.
Bekos M, Kaufmann M, Kobourov S, Symvonis A.  2013.  Smooth Orthogonal Layouts. Journal of Graph Algorithms and Applications. 17:575-595.
2012
Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus H-A, Meder B et al..  2012.  miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics. BMC Bioinformatics. 13(1):36
2011
Backes C, Rurainski A, Klau G, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M et al..  2011.  An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res. 40(6):e43
2009
Keller A, Backes C, Gerasch A, Kaufmann M, Kohlbacher O, Lenhof H.  2009.  A novel algorithm for detecting differentially regulated paths based on Gene Set Enrichment Analysis. Bioinformatics. Abstract
2008
Keller A, Backes C, Al-Awadhi M, Gerasch A, Kuntzer J, Kohlbacher O, Kaufmann M, Lenhof H.  2008.  GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics. 9:552. Abstract