Publications

Export 25 results:
Sort by: [ Author (Asc)] Title Year
Filters: Project is [Project Phase 1] Zoomable Cell  [Clear All Filters]
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z   [Show ALL]
A
Andreopoulos B, Winter C, Labudde D, Schroeder M.  2009.  Triangle network motifs predict complexes by complementing high-error interactomes with structural information. BMC Bioinformatics.
B
Brachmann E, Spehr M, Gumhold S.  2013.  Feature propagation on image webs for enhanced image retrieval. Proceedings of the 3rd ACM conference on International conference on multimedia retrieval. ACM, 2013.
D
Dietze H, Alexopolou D, Alvers MR, Barrio-Alvers L, Andreopoulos B, Doms A, Hakenberg J, Mönnich J, Plake C, Reischuck A et al..  2009.  GoPubMed: Exploring PubMed with Ontological Background Knowledge. Bioinformatics for Systems Biology. Humana Press.
Dietze H, Schroeder M.  2009.  GoWeb: A semantic search engine for the life science web. BMC Bioinformatics.
G
Gache V, Waridel P, Winter C, Juhem A, Schroeder M, Shevchenko A, Popov AV.  2010.  Xenopus meiotic microtubule-associated protein interaction network.. PLoS One. :e9248.
Gumhold S, Spehr M.  2011.  Directed Image Search with Local Parallel Feature Axes. The Second Workshop on Visual Content Identification and Search.
M
Maisel M, Habisch H, Royer L, Herr A, Milosevic J, Liebau S, Brenner R, Schwarz J, Schroeder M, Storch A.  2010.  Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators.. To appear in Experimental Cell Research.
Marsico A, Scheubert K, Henschel A, Winter C, Winnenburg R, Tuukkanen A, Vassilev B, Schroeder M.  2010.  MeMotif: Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins.. Nucleic Acids Research. :D181--D189.
Marsico A, Henschel A, Winter C, Tuukkanen A, Vassilev B, Scheubert K, Schroeder M.  2010.  Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins.. BMC Bioinformatics.
Mende S, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Royer L, Schroeder M, Reichmann H, Storch A.  2009.  Whole blood genome-wide expression profiling of A3243G MELAS patients reveals alternative disease-modifying gene clusters.
O
Oliver H, Diallo G, de Quincey E, Kostkova P, Jawaheer G, Alexopolou D, Habermann B, Stevens R, Jupp S, Khelif K et al..  2009.  A User-Centered Evaluation Framework for the Sealife Semantic Web Browsers. BMC Bioinformatics.
P
Plake C, Schroeder M.  2010.  Computational Polypharmacology with Text Mining and Ontologies. Current Pharmaceutical Biotechnology.
Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M.  2009.  GoGene: gene annotation on the fast lane. Nucleic Acid Research.
Preissner S, Kroll K, Dunkel M, Senger C, Goldsobel G, Kuzman D, Guenther S, Winnenburg R, Schroeder M, Preissner R.  2009.  SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. Nucleic Acids Research.
R
Royer L, Stewart AF, Schroeder M.  2009.  Network compression as a quality measure for protein interaction networks.
Royer L, Plake C, Schroeder M.  2009.  Identifying hot cancer and novel novel cell-cycle genes from literature. Proceedings of the German Conference on Bioinformatics. Gesellschaft für Informatik.
Rueckert F, Dawelbait G, Winter C, Hartmann A, Schroeder M, Schackert HK, Sipos B, Kloeppel G, Kalthoff H, Saeger H-D et al..  2010.  Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis. PLoS One.
S
Sauer U, Wächter T, Grune B, Doms A, Alvers MR, Spielmann H, Schroeder M.  2009.  Go3R - Semantic Internet Search Engine for Alternative Methods to Animal Testing. ALTEX.
Sauer U, Kneuer C, Tentschert J, Wächter T, Schroeder M, Luch A, Liebsch M, Grune B, Goetz ME.  2010.  A knowledge-based search engine to navigate the information thicket of nanotoxicology. Regulatory Toxicology and Pharmacology.
Spehr M, Viergutz A, Gumhold S.  2010.  A Semi-Automatic Image Morphing Technique for Biological Images. EG Workshop VCBM 2010 (Poster).
Spehr M, Gumhold S, Grottel S.  2015.  Wifbs: A Web-based Image Feature Benchmark System. MultiMedia Modeling - 21th Anniversary International Conference, {MMM} 2015, Sydney, Australia, January 5-7, 2015, Proceedings.
Spehr M, Gumhold S, Fleming RW.  2011.  Sum-of-Superellipses - A Low Parameter Model for Amplitude Spectra of Natural Images. International Conference on Image Analysis and Processing 2011. 6978/2011:128--138.
T
Tuukkanen A, Henschel A, Huang B, Stewart AF, Schroeder M.  2010.  Structural Modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint-based docking. Proteomics.
W
Wächter T, Schroeder M.  2010.  Semi-automated ontology generation within OBO-Edit.. Bioinformatics. :i88--i96.
Winnenburg R, Plake C, Schroeder M.  2009.  Mutation tagging with gene identifiers applied to membrane protein stability prediction. BMC Bioinformatics.