Publications

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Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof H-P.  2013.  NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics (Oxford, England). 29(13):1702-3.
Stöckel D, Lenhof H-P.  2015.  Detecting Dysregulated Processes and Pathways. Nucleic Acids as Molecular Diagnostics. :309-324.
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Li D, Beisswenger C, Herr C, Hellberg J, Han G, Zakharkina T, Voss M, Wiewrodt R, Bohle RM, Menger MD et al..  2014.  Myeloid cell RelA/p65 promotes lung cancer proliferation through Wnt/β-catenin signaling in murine and human tumor cells. Oncogene.
Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus H-A, Meder B et al..  2012.  miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics. BMC Bioinformatics. 13(1):36
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Gerasch A, Faber D, Küntzer J, Niermann P, Kohlbacher O, Lenhof H-P, Kaufmann M.  2014.  BiNA: a visual analytics tool for biological network data.
Gerasch A, Küntzer J, Niermann P, Stöckel D, Kaufmann M, Kohlbacher O, Lenhof H-P.  2015.  Network-based interactive navigation and analysis of large biological datasets. it - Information Technology. 57(1):37-48.
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Backes C, Rurainski A, Klau G, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M et al..  2011.  An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res. 40(6):e43