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Schäfer S, Nylund K, Sævik F, Engjom T, Mézl M, Jiřík R, Dimcevski G, Gilja OH, Tönnies KD.  2014.  Semi-automatic motion compensation of contrast-enhanced ultrasound images from abdominal organs for perfusion analysis. Computers in Biology and Medicine.
Schäfer S, Hentschke CM, Tönnies KD.  2010.  Local Similarity Measures for ROI-based Registration of DCE-MRI of the Breast. Proc. of Medical Image Understanding and Analysis (MIUA). :159-163.
Steffen J, Rak M, König T, Tönnies KD.  2016.  Information Efficient Automatic Object Detection and Segmentation using Cosegmentation, Similarity Based Clustering and Graph Label Transfer. 5th International Conference on Pattern Recognition Applications and Methods (ICPRAM). :397–406.
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Tönnies KD, Rak M, Engel K.  2014.  Deformable part models for object detection in medical images. BioMedical Engineering OnLine. 13:S1.
Tönnies KD, König T, Gloger O.  2016.  Domain knowledge for level set segmentation in medical imaging - a review. Biomedical Image Segmentation: Advances and Trends. :49–74.
Tönnies KD, Gloger O, Rak M, Winkler C, Klemm P, Preim B, Völzke H.  2015.  Image analysis in epidemiological applications. it - Information Technology. 57:22-29.