Publications

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Gache V, Waridel P, Winter C, Juhem A, Schroeder M, Shevchenko A, Popov AV.  2010.  Xenopus meiotic microtubule-associated protein interaction network.. PLoS One. :e9248.
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Mende S, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Royer L, Schroeder M, Reichmann H, Storch A.  2009.  Whole blood genome-wide expression profiling of A3243G MELAS patients reveals alternative disease-modifying gene clusters.
Mende S, Royer L, Herr A, Schmiedel J, Deschauer M, Klopstock T, Kostic VS, Schroeder M, Reichmann H, Storch A.  2010.  Whole blood genome-wide expression profiling and network analysis suggest MELAS master regulators. Neurological Research.
U
Oliver H, Diallo G, de Quincey E, Kostkova P, Jawaheer G, Alexopolou D, Habermann B, Stevens R, Jupp S, Khelif K et al..  2009.  A User-Centered Evaluation Framework for the Sealife Semantic Web Browsers. BMC Bioinformatics.
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Andreopoulos B, Winter C, Labudde D, Schroeder M.  2009.  Triangle network motifs predict complexes by complementing high-error interactomes with structural information. BMC Bioinformatics.
S
Preissner S, Kroll K, Dunkel M, Senger C, Goldsobel G, Kuzman D, Guenther S, Winnenburg R, Schroeder M, Preissner R.  2009.  SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. Nucleic Acids Research.
Tuukkanen A, Henschel A, Huang B, Stewart AF, Schroeder M.  2010.  Structural Modeling of histone methyltransferase complex Set1C from Saccharomyces cerevisiae using constraint-based docking. Proteomics.
Marsico A, Henschel A, Winter C, Tuukkanen A, Vassilev B, Scheubert K, Schroeder M.  2010.  Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins.. BMC Bioinformatics.
Wächter T, Schroeder M.  2010.  Semi-automated ontology generation within OBO-Edit.. Bioinformatics. :i88--i96.
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Royer L, Stewart AF, Schroeder M.  2009.  Network compression as a quality measure for protein interaction networks.
M
Winnenburg R, Plake C, Schroeder M.  2009.  Mutation tagging with gene identifiers applied to membrane protein stability prediction. BMC Bioinformatics.
Marsico A, Scheubert K, Henschel A, Winter C, Winnenburg R, Tuukkanen A, Vassilev B, Schroeder M.  2010.  MeMotif: Structural fragment clustering reveals novel structural and functional motifs in alpha-helical transmembrane proteins.. Nucleic Acids Research. :D181--D189.
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Sauer U, Kneuer C, Tentschert J, Wächter T, Schroeder M, Luch A, Liebsch M, Grune B, Goetz ME.  2010.  A knowledge-based search engine to navigate the information thicket of nanotoxicology. Regulatory Toxicology and Pharmacology.
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Royer L, Plake C, Schroeder M.  2009.  Identifying hot cancer and novel novel cell-cycle genes from literature. Proceedings of the German Conference on Bioinformatics. Gesellschaft für Informatik.
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Dietze H, Schroeder M.  2009.  GoWeb: A semantic search engine for the life science web. BMC Bioinformatics.
Dietze H, Alexopolou D, Alvers MR, Barrio-Alvers L, Andreopoulos B, Doms A, Hakenberg J, Mönnich J, Plake C, Reischuck A et al..  2009.  GoPubMed: Exploring PubMed with Ontological Background Knowledge. Bioinformatics for Systems Biology. Humana Press.
Plake C, Royer L, Winnenburg R, Hakenberg J, Schroeder M.  2009.  GoGene: gene annotation on the fast lane. Nucleic Acid Research.
Sauer U, Wächter T, Grune B, Doms A, Alvers MR, Spielmann H, Schroeder M.  2009.  Go3R - Semantic Internet Search Engine for Alternative Methods to Animal Testing. ALTEX.
Maisel M, Habisch H, Royer L, Herr A, Milosevic J, Liebau S, Brenner R, Schwarz J, Schroeder M, Storch A.  2010.  Genome-wide expression profiling and functional network analysis upon neuroectodermal conversion of human mesenchymal stem cells suggest HIF-1 and miR-124a as important regulators.. To appear in Experimental Cell Research.
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Rueckert F, Dawelbait G, Winter C, Hartmann A, Schroeder M, Schackert HK, Sipos B, Kloeppel G, Kalthoff H, Saeger H-D et al..  2010.  Examination of Apoptosis Signaling in Pancreatic Cancer by Computational Signal Transduction Analysis. PLoS One.
C
Plake C, Schroeder M.  2010.  Computational Polypharmacology with Text Mining and Ontologies. Current Pharmaceutical Biotechnology.