Publications

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Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus H-A, Meder B et al..  2012.  miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics. BMC Bioinformatics. 13(1):36
Schäfer S, Nylund K, Gilja OH, Tönnies KD.  2012.  Motion compensation of ultrasonic perfusion images. Medical Imaging 2012: Ultrasonic Imaging, Tomography, and Therapy.
Jaimez M, Souiai M, Stueckler J, Gonzalez-Jimenez J, Cremers D.  2015.  Motion Cooperation: Smooth Piece-Wise Rigid Scene Flow from RGB-D Images. Proc. of the Int. Conference on 3D Vision (3DV).
Andrienko N, Andrienko G, Giannotti F, Monreale A, Pedreschi D.  2009.  Movement Data Anonymity through Generalization. Proceedings of 2nd SIGSPATIAL ACM GIS 2009 International Workshop on Security and Privacy in GIS and LBS. Abstract
Monreale A, Andrienko G, Andrienko N, Giannotti F, Pedreschi D, Rinzivillo S, Wrobel S.  2010.  Movement Data Anonymity through Generalization. Transactions on Data Privacy. :pp.91-121.
Günnemann S, Färber I, Seidl T.  2012.  Multi-view clustering using mixture models in subspace projections. Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'12). :132-140.
Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, Steinbeck C, Neuhauser N et al..  2014.  The mzTab Data Exchange Format: communicating MS-based proteomics and metabolomics experimental results to a wider audience. Mol. Cell. Prot.. :2765-2775.
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Gladisch S, Schumann H, Tominski C.  2013.  Navigation Recommendations for Exploring Hierarchical Graphs. Advances in Visual Computing.
Gerasch A, Küntzer J, Niermann P, Stöckel D, Kaufmann M, Kohlbacher O, Lenhof H-P.  2015.  Network-based interactive navigation and analysis of large biological datasets. it - Information Technology. 57(1):37-48.
Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof H-P.  2013.  NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics (Oxford, England). 29(13):1702-3.
Keller A, Backes C, Gerasch A, Kaufmann M, Kohlbacher O, Lenhof H.  2009.  A novel algorithm for detecting differentially regulated paths based on Gene Set Enrichment Analysis. Bioinformatics. Abstract
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Jaimez M, Souiai M, Gonzalez-Jimenez J, Cremers D.  2015.  A Primal-Dual Framework for Real-Time Dense RGB-D Scene Flow. Proc. of the IEEE Int. Conf. on Robotics and Automation (ICRA).
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Gerasch A, Kaufmann M, Kohlbacher O.  2014.  Rebuilding KEGG Maps - An integrative approach for visual analytics of metabolic networks. PacificVis 2014. :97-104.
Schäfer S, Angelelli P, Nylund K, Gilja OH, Tönnies KD.  2011.  Registration of ultrasonography sequences based on temporal regions. 7th Intl. Symp. on Image and Signal Processing and Analysis (ISPA 2011). :749--759.
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Parent C, Spaccapietra S, Renso C, Andrienko G, Andrienko N, Bogorny V, Damiani ML, Gkoulalas-divanis A, Macedo J, Pelekis N et al..  2012.  Semantic Trajectories Modeling and Analysis. ACM Computing Surveys.
Parent C, Spaccapietra S, Renso C, Andrienko G, Andrienko N, Bogorny V, Damiani ML, Gkoulalas-divanis A, Macedo J, Pelekis N et al..  2013.  Semantic Trajectories Modeling and Analysis. ACM Computing Surveys. v.45(4)
Spehr M, Viergutz A, Gumhold S.  2010.  A Semi-Automatic Image Morphing Technique for Biological Images. EG Workshop VCBM 2010 (Poster).
Schäfer S, Nylund K, Sævik F, Engjom T, Mézl M, Jiřík R, Dimcevski G, Gilja OH, Tönnies KD.  2014.  Semi-automatic motion compensation of contrast-enhanced ultrasound images from abdominal organs for perfusion analysis. Computers in Biology and Medicine.
Günnemann S, Färber I, Mausbach T, Seidl T.  2014.  SMVC: Semi-Supervised Multi-View Clustering in Subspace Projections. ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'14). 20:253-262.
Günnemann S, Färber I, Raubach S, Seidl T.  2013.  Spectral Subspace Clustering for Graphs with Feature Vectors. Proceedings of the IEEE International Conference on Data Mining (ICDM 2013).
Borgo R, Chen M, Daubney B, Grundy E, Heidemann G, Höferlin B, Höferlin M, Jänicke H, Weiskopf D, Xie X.  2012.  State of the Art Report on Video-based Graphics and Video Visualizations. Computer Graphics Forum.
Lex A, Streit M, Schulz H-J, Partl C, Schmalstieg D, Park PJ, Gehlenborg N.  2012.  StratomeX: Visual Analysis of Large-Scale Heterogeneous Genomics Data for Cancer Subtype Characterization. Computer Graphics Forum. 31(3):1175--1184.
Günnemann S, Färber I, Virochsiri K, Seidl T.  2012.  Subspace correlation clustering: finding locally correlated dimensions in subspace projections of the data. Proceedings of the 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD'12). :352-360.
Spehr M, Gumhold S, Fleming RW.  2011.  Sum-of-Superellipses - A Low Parameter Model for Amplitude Spectra of Natural Images. International Conference on Image Analysis and Processing 2011. 6978/2011:128--138.
Preissner S, Kroll K, Dunkel M, Senger C, Goldsobel G, Kuzman D, Guenther S, Winnenburg R, Schroeder M, Preissner R.  2009.  SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. Nucleic Acids Research.